| RefNo | Title | Date |
| DM/2/111 | Copy of financial statement by J Harrison, prepared in connection with Stephen Lee's resignation from the position of Assistant Secretary to the Royal Society | 13 January 1827 |
| DM/2/99 | 'Statement addressed to the President & Council of the Royal Society respecting the value of the Greenwich observations for 1822' | c.1825 |
| CB/1/4/241 | Letter from Stephen Lee, Royal Society to Charles Blagden, 5 High Row | 9 July 1819 |
| DM/2/108 | Copy of letter from John Barrow, Admiralty Office, to Stephen Lee | 4 July 1825 |
| DM/3/16 | Letter from Hobhouse, Whitehall, to Stephen Lee, Assistant Secretary, Royal Society | 20 June 1825 |
| DM/2/97 | Letter from John Pond, Royal Observatory, to Stephen Lee | 21 April 1825 |
| DM/2/106 | Preamble to a report of the Lee's Charges Committee | 1825 |
| DM/3/13 | Letter from C Clarke (for Imperial Gas Light & Coke Co) to Stephen Lee, Assistant Secretary, Royal Society | 20 June 1825 |
| DM/3/74 | Letter from Stephen Lee, Asssistant Secretary, Royal Society, to Sir Humphry Davy | 5 December 1823 |
| DM/1/80 | Letter from William Nicol, Cleveland Row, to Stephen Lee | 17 October 1822 |
| DM/2/110 | Letter from Stephen Lee, Somerset House, to the President & Council of the Royal Society | 6 April 1826 |
| DM/2/109 | Letter from JW Croker, Admiralty Office, to William Thomas Brande | 7 July 1825 |
| DM/2/98 | This appears to be the Astronomer Royal's reply to Stephen Lee's animadversions | 1825 |
| DM/2/107 | Copy of a letter from Stephen Lee, Somerset House, to JW Croker | 2 July 1825 |
| DM/3/80 | Letter from Henry Woodthorpe, Guildhall, to Stephen Lee, Asssistant Secretary, Royal Society | 14 January 1824 |
| DM/2/104 | Minutes of a meeting of Lee's Charges Committee | 2 June 1825 |
| DM/3/75 | Letter from Henry Woodthorpe, Guildhall, to Stephen Lee, Asssistant Secretary, Royal Society | 10 December 1823 |
| DM/2/96 | Copy of letter from Stephen Lee, Royal Society, to John Pond | 9 April 1825 |
| DM/2/103 | Minutes of a meeting of Lee's Charges Committee | 1 June 1825 |
| DM/3/76 | Letter from Henry Woodthorpe, Guildhall, to Stephen Lee, Asssistant Secretary, Royal Society | 17 December 1823 |
| DM/3/79 | Letter from WH Wollaston, Buckingham Street, to Stephen Lee, Asssistant Secretary, Royal Society | 10 January 1824 |
| MM/22/28 | Printed circular letter from Stephen Lee, the Royal Society, to William Hyde Wollaston | 21 April 1817 |
| CB/1/4/242 | Letter from Stephen Lee, Royal Society to Charles Blagden, 45 Brompton Row, Knightsbridge | 15 July 1819 |
| CB/1/4/238 | Letter from Stephen Lee to Charles Blagden | 20 June 1816 |
| CB/1/4/239 | Letter from Stephen Lee, Royal Society to Charles Blagden | 12 May 1817 |
| CB/1/4/240 | Letter from Stephen Lee, Royal Society to Sir Joseph Banks | 30 December 1817 |
| MA/220 | Meteorological observations at the Royal Society's apartments at Somerset House, London | 1 January 1812-8 January 1823 |
| MS/425/414 | Copy letter, James Hudson, Assistant Secretary of the Royal Society, to Stephen Lee junior | 13 August 1833 |
| EC/1798/01 | Lee, Stephen: certificate of election to the Royal Society | 19 April 1798 |
| MM/8/79 | Letter from Stephen Lee, Royal Society, to Sir Joseph Banks | 18 December 1815 |
| MC/1/206 | Letter from Sir James South, Observatory Kensington, to [Davies Gilbert] President of the Royal Society and to the Council | 11 March 1830 |
| DM/3/73 | Letter from Henry Woodthorpe, Guildhall, to Stephen Lee, Asssistant Secretary, Royal Society | 4 December 1823 |
| DM/3/78 | Letter from John Rennie, Stamford Street, to Stephen Lee, Asssistant Secretary, Royal Society | 2 January 1824 |
| DM/3/82 | Letter from John Rennie, Stamford Street, to Stephen Lee, Asssistant Secretary, Royal Society | 19 January 1824 |
| DM/2/95 | Letter from Thomas Taylor (for Astronomer Royal), Royal Observatory, to Stephen Lee | 23 December 1824 |
| DM/2/94 | Copy of letter from Stephen Lee to John Pond | 20 December 1834 |
| DM/2/105 | Minutes of a meeting of Lee's Charges Committee | 4 June 1825 |
| DM/2 | Domestic Manuscripts Volume 2 | 1727-1834 |
| MS/859/2/37 | Letter of appointment by Humphry Davy, nominating Charles Hatchett as Deputy President of the Royal Society | 7 December 1820 |
| MC/1/98 | Letter from George Rennie, [Inspector of Machinery and Clerk of the Irons], Royal Mint, to Stephen Lee, Assistant Secretary of the Royal Society | 27 November 1823 |
| MC/1/106 | Letter from John Farey, 37 Howland Street, Fitzroy Square, to Stephen Lee, Assistant Secretary of the Royal Society | 18 March 1824 |
| MC/1/107 | Letter from John Dundas Cochrane, 20 Cadogan Terrace, Sloane Street, to Stephen Lee, Assistant Secretary of the Royal Society | 20 March 1824 |
| MC/1/134 | Letter from William Clift, Royal College of Surgeons, Lincoln's Inn Fields, to Stephen Lee, Assistant Secretary of the Royal Society | 5 August 1825 |
| MC/1/135 | Letter from John Pond, Astronomer Royal, to the Royal Society | 19 October 1825 |
| MC/1/217 | Letter from Sir James South, Observatory Kensington, to [Davies Gilbert], President of the Royal Society and to the Council | 22 April 1830 |
| MC/1/218 | Letter from Dr. [Peter Mark] Roget, Secretary of the Royal Society, Bernard Street, to Sir James South | 22 April 1830 |
| MC/1/221 | Letter from Captain Henry Kater, York Gate, to Dr. [Peter Mark] Roget, Secretary of the Royal Society | 26 April 1830 |
| MC/1/219 | Letter from Dr. [Peter Mark] Roget, Secretary of the Royal Society, Bernard Street, to Sir James South | 22 April 1830 |
| MC/1/342 | Letter from John Jackson, 100 St Martin's Lane, to the Royal Society | 23 November 1831 |
| PT/9/21 | Paper, 'On the dispersive power of the atmosphere, and its effect on astronomical observations' by Stephen Lee | [1815] |
| MC/1 | Volume 1 of miscellaneous correspondence regarding business matters, sent to the Royal Society | 1800-1831 |
| PT/1/14 | Letter, regarding observations of planet Vesta from Stephen Groombridge to Stephen Lee | 29 April 1807 |
| MC/1/152 | Letter from Stephen Lee, [Assistant Secretary of the Royal Society], 14 Kensington Square, to Sir John Frederick William Herschel, Secretary of the Royal Society | 30 May 1827 |
| MS/957/36 | Letter from Thomas Young, Worthing, to [Henry Kater] | 26 August 1816 |
| MA/220/3 | Meteorological observations at the Royal Society's apartments at Somerset House, London, by [Stephen Lee?] | 1 January-31 December 1814 |
| MA/220/2 | Meteorological observations at the Royal Society's apartments at Somerset House, London, by [Stephen Lee?] | 1 January-31 December 1813 |
| MA/220/5 | Meteorological observations at the Royal Society's apartments at Somerset House, London, by [Stephen Lee?] | 1 January-31 December 1816 |
| MA/220/4 | Meteorological observations at the Royal Society's apartments at Somerset House, London, by [Stephen Lee?] | 1 January-31 December 1815 |
| MA/220/1 | Meteorological observations at the Royal Society's apartments at Somerset House, London, by [Stephen Lee?] | 1 January-31 December 1812 |
| MA/220/6 | Meteorological observations at the Royal Society's apartments at Somerset House, London, by [Stephen Lee?] | 1 January-31 December 1817 |
| MA/220/7 | Meteorological observations at the Royal Society's apartments at Somerset House, London, by [Stephen Lee?] | 1 January-31 December 1818 |
| MA/220/8 | Meteorological observations at the Royal Society's apartments at Somerset House, London, by [Stephen Lee?] | 1 January 1819-3 January 1820 |
| MA/220/9 | Meteorological observations at the Royal Society's apartments at Somerset House, London, by [Stephen Lee?] | 1 January 1820-2 January 1821 |
| MA/220/10 | Meteorological observations at the Royal Society's apartments at Somerset House, London, by [Stephen Lee?] | 1 January 1821-1 January 1822 |
| MA/220/11 | Meteorological observations at the Royal Society's apartments at Somerset House, London, by [Stephen Lee?] | 1 January 1822-8 January 1823 |
| MA/322 | Meteorological observations at the Royal Society's apartments at Somerset House, London | 1 January 1823- 31 December 1823 |
| MA/322/3 | Meteorological observations at the Royal Society's apartments at Somerset House, London, by [Stephen Lee?] | 1 December 31 December 1823 |
| MA/322/2 | Meteorological observations at the Royal Society's apartments at Somerset House, London, by [Stephen Lee?] | 1 July-30 November 1823 |
| MA/322/4 | Meteorological observations at the Royal Society's apartments at Somerset House, London, by [Stephen Lee?] | 1 January-31 December 1823 |
| MA/322/1 | Meteorological observations at the Royal Society's apartments at Somerset House, London, by [Stephen Lee?] | 1 January-30 June 1823 |
| HS/8/110 | Letter, from Davies Gilbert to Sir John Herschel, dated at Eastbourne | 4 April 1826 |
| HS/11/188 | Letter, from Stephen Lee to Sir John Herschel, dated at British Museum | 14 July 1828 |
| DM/2/102 | Letter from Stephen Lee, Royal Society, to John Frederick William Herschel | 20 May 1835 |
| HS/26/25 | Letter, from Stephen Lee to Sir John Herschel, dated at Royal Society | 17 November 1825 |
| HS/7/334 | Letter, from Thomas I. M. Forster to Sir John Herschel, dated at Bruges | 17 November 1843 |
| HS/21/18 | Copy of draft letter, from Sir John Herschel to Stephen Lee | 12 July 1828 |
| HS/2/90 | Letter, from Sir John Herschel to Charles Babbage | 10 March 1818 |
| HS/10/254a | Letter, from James Ivory to Sir John Herschel, dated at 20 Southampton St., Pentonville | 10 July 1828 |
| HS/16/426 | Draft letter, from Sir John Herschel to James South, dated at London | 8 January 1824 |
| HS/20/53 | Copy letter, from Sir John Herschel to Charles Babbage | 10 March 1818 |
| MS/957/5 | Letter from Stephen Lee, the Royal Society, Somerset Place, to Captain Henry Kater | 29 March 1816 |
| HS/11/187 | Draft letter, from Sir John Herschel to Stephen Lee | July 1828 |
| HS/21/17 | Copy of draft letter, from Sir John Herschel to James Ivory | 12 July 1828 |
| HS/16/432 | Draft letter, from Sir John Herschel to James South, dated at Charlotte St., Portland Place | 8 January 1824 |
| FL/4/1 | List of candidates for the office of Clerk to the Royal Society | [1810] |
| HS/20/173 | Copy of draft letter, from Sir John Herschel to James South, dated at London | 8 January 1824 |
| HS/20/172 | Copy of draft letter, from Sir John Herschel to James South, dated at Charlotte St., Portland Place | 8 January 1824 |